PUBLICATIONS – full-text articles available here: NCBI Bibliography

(* indicates co-first author)

31.   Tompkins V.S, Valverde D.P, Moss W.N. "Human regulatory proteins associate with non-coding RNAs from the EBV IR1 region" BMC Res Notes  (2018) 11:139

30.   Moss W.N. "RNA2DMut: a web tool for the design and analysis of RNA structure mutations" RNA. 2018 Mar;24(3):273-286.

29.  Andrews RJ, Baber L, Moss W.N. "RNAStructuromeDB: A genome-wide database for RNA structural inference" Sci Rep. 2017 Dec 8;7(1):17269.

28.  Soszynska-Jozwiak M., Michalak P., Moss W.N., Kierzek R., Kesy J, Kierzek E. "Influenza virus segment 5 (+)RNA - secondary structure and new targets for antiviral strategies" Sci Rep. 2017 Nov 8;7(1):15041.

27.   Ruszkowska A., Lenartowicz E., Moss W.N., Kierzek R., Kierzek E. "Secondary structure model of the naked segment 7 influenza A virus genomic RNA" Biochem J. 2016 Dec 1;473(23):4327-4348.

26.    Pawlica P., Moss W.N., Steitz J.A. “Host miRNA degradation by Herpesvirus saimiri small nuclear RNA requires an unstructured interacting region” RNA. 2016 doi: 10.1261/rna.054817.115

25.    Lenartowicz E., Kesy J., Ruszkowska A., Soszynska-Jozwiak M., Michalak P., Moss W.N., Turner D.H., Kierzek R., Kierzek E. “Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus” PLoS ONE. 2016 11(2):e0148281.

24.    Fang R., Moss W.N.*, Rutenberg-Schoenberg M. and Simon M.D. “Probing Xist RNA Structure in Cells Using Targeted Structure-Seq” PLoS Genetics 11(12): e1005668.

23.    Soszynska-Jozwiak M., Michalak P., Moss W.N., Kierzek R., and Kierzek E. "A conserved secondary structural element in the coding region of the influenza A virus nucleoprotein (NP) mRNA is important for the regulation of viral proliferation" PLoS ONE 2015 10(10):e0141132.

22.    Moss W.N., and Steitz J.A. “In silico discovery and modeling of non-coding RNA structure in viruses” Methods. 2015; pii: S1046-2023(15)30003-7.

21.    Cao S, Moss W.N., O'Grady T, Concha M, Strong MJ, Wang X, Yu Y, Baddoo M, Zhang K, Fewell C, Lin Z., Dong Y., and Flemington E.K. “New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription” J Virol. 2015 89(14):7120-32.

20.    Lee N., Moss W.N., Yario T., and Steitz J.A. “An Epstein–Barr virus non-coding RNA uses base pairing to recruit the PAX5 transcription factor to its DNA target” Cell 2015; 160(4):607–618.

19.    Cao S., Strong M.J., Wang X., Moss W.N., Concha M., Lin Z., O'Grady T., Baddoo M., Fewell C., Renne R., and Flemington E.K. “High-Throughput RNA sequencing based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project.” J Virol. 2014; pii: JVI.02570-14.

18.    Jiang T., Kennedy S., Moss W.N., Kierzek E., and Turner D.H. “Secondary Structure of a Conserved Domain in an Intron of Influenza A M1 mRNA” Biochemistry 2014; 53 (32): 5236-5248.

17.  Moss W.N. “Analyses of non-coding RNAs generated from the Epstein–Barr virus W repeat region” Proceedings IWBBIO 2014; 238-252.

16.  Moss W.N., Lee N, Pimienta G, Steitz J.A. “RNA families in Epstein–Barr virus” RNA Biology 2014; 11:1-8.

15.  Dela-Moss L.I., Moss W.N., and Turner D.H. “Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C” BMC Research Notes 2014; 7:22.

14.  Moss W.N., and Steitz, J.A. “Genome-wide analyses of Epstein–Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA” BMC Genomics 2013; 14:543.

13.  Moss W.N. “Computational prediction of RNA secondary structure” Methods in Enzymology 2013; 530:3-65.

12.  Priore, S.F., Baman, J., Moss W.N., Dela-Moss, L.I., Kierzek, E., Kierzek, R., and Turner, D.H. “Secondary Structure of a Conserved Domain in the Intron of Influenza A NS1 mRNA” PLoS ONE 2013; 8(9): e70615.

12.  Priore, S.F., Moss W.N.*, and Turner, D.H. “Influenza B virus has global ordered RNA structure in (+) and (-) strands but relatively less stable predicted RNA folding free energy than allowed by the encoded protein sequence” BMC Research Notes 2013; 6:330.

10.  Moss W.N., Dela-Moss, L.I., Priore, S.F., and Turner, D.H. “The influenza A segment 7 mRNA 3′ splice site pseudoknot/hairpin family” RNA Biology 2012; 9:1-6.

9.  Moss W.N., Dela-Moss, L.I., Kierzek, E., Kierzek, R., Priore, S.F., and Turner, D.H. “The 3′ splice site of influenza A segment 7 mRNA can exist in two conformations: a pseudoknot and a hairpin” PLoS ONE 2012; 7(6): e38323.

8.  Priore, S.F., Moss W.N.*, and Turner, D.H. “Influenza A virus coding regions exhibit host-specific global ordered RNA structure” PLoS ONE 2012; 7(4): e35989.

7.  Moss W.N., Priore, S.F., and Turner, D.H. “Identification of potential conserved RNA secondary structure throughout influenza A coding regions” RNA 2011; 17:991-1011.

6.  Moss W.N., Eickbush, D.G., Lopez, M.J., Eickbush, T.H., and D.H. Turner, D.H. “The R2 retrotransposon RNA families” RNA Biology 2011; 8:714-718.

5.  Mathews, D.H., Moss W.N., and Turner, D.H. “Folding and finding RNA secondary structure” RNA Worlds, 4th Edition (ed., Atkins, J.F, Gesteland, R.F., and Cech, T.R.) 2010 Cold Spring Harbor Press, Cold Spring Harbor; cited as: Cold Spring Harb. Perspect. Biol. DOI:10.1101/cshperspect.a003665.

4.  Kierzek, E., Christensen, S.M., Eickbush, T.H., Kierzek, R., Turner, D.H., and Moss W.N. “Secondary structures for 5′ regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints” Journal of Molecular Biology 2009; 390:428-442.

3.  Kierzek, E., Kierzek, R., Moss W.N., Christensen, S.M., Eickbush, T.H., and Turner, D.H. “Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function” Nucleic Acids Research 2008; 36:1770-82.

2.  Brenner, E.D., Katari, M.S., Stevenson, D.W., Rudd, S.A., Douglas, A.W., Moss W.N., Twigg, R.W., Runko, S.J., Stellari, G.M., McCombie, W.R. and Coruzzi, G.M. “EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes” BMC Genomics 2005; 6:143.

1.  Moss W.N., and Goroff, N.S. “Theoretical analysis of the 13C NMR of iodoalkynes upon complexation with Lewis bases” Journal of Organic Chemistry 2005; 70:802-808.